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[1] Ziyi Li, Sandra Safo, Qi Long. ¡°.¡± BMC Bioinformatics. 2017;18(1):332.

[2] Ziyi Li?, Changgee Chang?, Suprateek Kundu, Qi Long. ¡°.¡± Biostatistics. 2020;21(3):610-624.

[3] Ziyi Li, Xiaoqian Jiang and Qi Long. ¡°.¡± Journal of Biomedical Informatics. 2019;92:103138.

[4] Ziyi Li, Zhijin Wu, Peng Jin, Hao Wu. ¡°.¡± Bioinformatics. 2019;35(20):3898-3905.

[5] Ziyi Li, Hao Wu. ¡°.¡± Genome Biology. 2019;20(1):190.

[6] Weiwei Zhang?, Ziyi Li?, Nana Wei, Hao Wu, Xiaoqi Zheng. ¡°.¡± Bioinformatics. 2020;36(7):2017-2024.

[7] Ziyi Li#;, Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu#;. ¡°.¡± Bioinformatics. 2020;36(11):3431-3438.

[8] Weiwei Zhang, Hao Wu#;, Ziyi Li#;. ¡°.¡± Bioinformatics. 2021;37(8):1052-1059.

[9] Ziyi Li, Yijian Huang, Datta Patil, Martin G. Sanda. ¡°¡± Biometrics. 2023;79(1):39-48.

[10] Ziyi Li#;, Hao Feng#;. ¡°A neural network based exhaustive cell annotation method for single cell RNA-seq transcripts.¡± Scientific Reports, in press.

[11] Ziyi Li, Xiaoqian Jiang, Yizhuo Wang, Yejin Kim. "." Emerging Topics in Life Science. 2021;5(6):765-777..

[12] Yizhuo Wang*, Bing Z. Carter, Ziyi Li#;, Xuelin Huang#;. ¡°Application of machine learning methods in clinical trials with response-adaptive randomization.¡± JAMIA, in press.

[13] Xin Wei?, Ziyi Li?, Hao Wu. ¡°.¡± Bioinformatics. 2022;38(10):2692-2699.

[14] Xiaobo Sun, Xiaochu Lin, Ziyi Li, Hao Wu. ¡°.¡± Briefings in Bioinformatics. 2022;23(2):bbab567.

[15] Duan, Daoyu, Sijia He, Emina Huang, Ziyi Li, and Hao Feng. ¡°.¡± Bioinformatics. 2022 Feb 17;38(8):2361¨C3.

[16] Yizhuo Wang*, Christopher Flowers, Ziyi Li#;, Xuelin Huang#;. ¡°¡±. Journal of Biomedical Informatics. 2022 Jul;131:104117.

[17] Yizhuo Wang*, Christopher Flowers, Ziyi Li#;, Xuelin Huang#;. ¡°.¡± Bioinformatics. 2022 Jul 8:btac461.

[18] Ziyi Li#;, Yizhuo Wang*, Irene Ganan-Gomez, Simona Colla, Kim-Anh Do#;. ¡°.¡± Bioinformatics. 2022;38(21):4885-4892.

[19] Guanqun Meng, Wen Tang, Emina Huang, Ziyi Li, Hao Feng. ¡°.¡± Bioinformatics. 2022;38(21):4885-4892.

[20] Ziyi Li, Yijian Huang, Datta Patil, Mark Rubin, Martin G. Sanda. ¡°.¡± Statistics in Medicine. 2023;42(7):953-969.

[21] Luxiao Chen, Ziyi Li, Hao Wu. ¡°.¡± Genome Biology. 2023;24(1):37.

[22] Ziyi Li, Yu Shen, Jing Ning. ¡°.¡± Journal of the American Statistical Association. 2023;118(544):2276-2287.

[23] Ruoxing Li*, Jianjun Zhang, Ziyi Li#. ¡°.¡± Bioinformatics Advances. 2023;3(1):vbad029.

[24] Ruoxing Li*, Mehmet Altan, Alexandre Reuben, Ruitao Lin, John V. Heymach, Hai Tran, Runzhe Chen, Latasha Little, Shawna Hubert, Jianjun Zhang#, Ziyi Li#. ¡°.¡± Briefings in Bioinformatics. 2023;24(4):bbad230.

[25] Hao Feng, Guanqun Meng, Tong Lin, Hemang Parikh, Yue Pan, Ziyi Li, Jeffery Krischer, Qian Li. ¡°.¡± Genome Biology. 2023;24(1):174.

[26] Sunyi Chi, Christopher R. Flowers, Ziyi Li, Xuelin Huang, Peng Wei. ¡°.¡° The Annals of  Applied  Statistics. 2024 Jun;18(2):1360-1377.

[27] Yuanxin Wang, Vakul Mohanty, Jinzhuang Dou, Ziyi Li, Ken Chen. ¡°.¡± Cell Reports Methods. 2024;4(12):100913.

[28] Peng Yang#*, Shawna M. Hubert, P. Andrew Futreal, Xingzhi Song, Jianhua Zhang, J. Jack Lee, Ignacio Wistuba, Ying Yuan, Jianjun Zhang, Ziyi Li#. ¡°.¡± Ann. Appl. Stat. 18(3): 1879-1898 (September 2024). DOI: 10.1214/23-AOAS1862. [An earlier version of this work won 2023 ASA SGG student paper award].

[29] Ziyi Li#, Ruoxing Li*, Irene Ganan-Gomez, Hussein A. Abbas, Guillermo Garcia-Manero, Wei Sun#. ¡°.¡± Scientific Reports. 2024;14(1):24152.

[30] Yizhuo Wang*, Christopher Flowers, Michael Wang, Xuelin Huang#, Ziyi Li#. ¡°.¡± Scientific Reports. 2024;14(1):10633.

[31] Yue Lyu*, Chong Wu, Wei Sun, Ziyi Li#. ¡°.¡± Bioinformatics. 2024 Apr 1;40(4):btae186.

[32] Yue Lyu*, Steven H. Lin, Hao Wu, Ziyi Li#. ¡°.¡± Bioinformatics. 2024 Sep 2;40(9):btae537.

[33] Saishi Cui, Zhining Sui, Ziyi Li, Ming Yu, William M. Grady, Wei Sun. ¡°Cancer-Specific Fine-Tuning of Histopathology Foundation Models Enables Clinical Translations.¡± Under review.

[34] Chenxuan Zang*, Charles C. Guo, Peng Wei#, Ziyi Li#. ¡°.¡± PLOS Computational Biology. 2026;22(3):e1014058.

[35] Lan Shui*, Anirban Maitra, Ying Yuan, Ken Lau, Harsimran Kaur, Liang Li#, Ziyi Li#, Translational and Basic Science Research in Early Lesions (TBEL) Program. ¡°.¡± PLOS Computational Biology. 2025 Jul 29;21(7):e1013293.

[36] Ruoxing Li*, Mauro Di Pilato, Jianjun Zhang, Tao Wang#, Ziyi Li#. ¡°A Systematic Benchmark of Clustering and Antigen-specific Prediction Methods using T Cell Receptor Sequencing Data.¡± Submitted.

[37] Vincent Bernard?, Li-Ting Ku?*, Tianyu Wang, Ariana Acevedo-Diaz, Kimal I Rajapakshe, Galia Jacobson, Daniela Tovar, Jimin Min, Guangsheng Pei, Candise Tat, Ayush Suresh, Ching-Wei D Tzeng, Matthew Hg Katz, Manoop S Bhutani, Huaming Wang, Robert A Wolff, Cara Haymaker, Ethan B Ludmir, Huocong Huang, Xiongfeng Chen, Liang Li, Albert C Koong, Linghua Wang, Nicholas E Navin, Dadi Jiang, Ziyi Li#, Anirban Maitra#, Eugene J Koay#. "." Preprint. bioRxiv. 2025;2025.06.20.660757. Under invited revision.

[38] Li-Ting Ku*, Vincent Bernard, Jimin Min, Ying Yuan, Eugene J. Koay, Aniban Maitra, Liang Li#, Ziyi Li#. ¡°¡±. Genome Biology. 2026;27(1):163..

[39] Chenxuan Zang*, Emily Eschueddig, Charles C. Guo, Lei Huo, Chunru Lin, Fariba Behbod, Peng Wei#, Ziyi Li#. ¡°highSpaClone: Copy Number Variation Inference and Tumor Subclone Analysis for High-Resolution Spatial Transcriptomics¡±. Under review.

[40] Ruoxing Li*, Peng Yang, Mauro Di Pilato, Jianjun Zhang, Christopher R Flowers, Lulu Shang#, Ziyi Li#. ¡°.¡± Nature Communications. 2025 Dec 16;17:726.

[41] Ancuta Jurj, Mihnea P. Dragomir, Ziyi Li#, George A. Calin#. ¡°.¡± Nature Reviews Clinical Oncology. 2026;23(4):239-259.

[42] Lan Shui*, Yunhe Liu, Idania C.L. Julio, Jean R. Clemenceau, Xen P. Hoi, Yibo Dai, Wei Lu, Jimin Min, Khaja Khan, Bailey Roemer, Mei Jiang, Rebecca E. Waters, Karen Colbert, Anirban Maitra, Max Wintermark, Ying Yuan, Keith S. Chan, Tae H. Hwang, Paul F. Mansfield, Jeremy Davis, Luisa Maren Solis Soto, Linghua Wang#, Liang Li #, Ziyi Li#. ¡°UniST: A Unified Framework for Advancing 3D Spatial Transcriptomics with Generative AI.¡± Submitted.

[43] Yue Lyu*, Kelly S. Chien, Koji Sasaki, Ian Bouligny, Jing Ning, Alex Bataller, Alexandre Bazinet, Wei-Ying Jen, Steven Hsesheng Lin, Mahesh Swaminathan, Danielle Hammond, Samuel Urrutia, Juan Jose Rodriguez-Sevilla, Guillermo Montalban-Bravo, Guillermo Garcia-Manero #, Ziyi Li#. ¡°Dynamic Prognostic Scoring System for Myelodysplastic Syndromes.¡± Submitted.

[44] Yue Lyu*, Xuelin Huang, Steven H. Lin, Ziyi Li#. ¡°SuperSurv: Survival Machine Learning Ensembles.¡±

[45] Ziyi Li, Yu Shen, Jing Ning. ¡°Addressing Unmeasured Covariates in Source Cohorts with Transfer Learning for Survival Outcomes.¡±

* = trained under supervision

? = co-first authorship; these authors contributed equally

#; = corresponding authorship

[1] Lal, Brajesh K., Wei Zhou, Ziyi Li, Tassos Kyriakides, Jon Matsumura, Frank A. Lederle, Julie Freischlag, and OVER Veterans Affairs Cooperative Study Group. ¡°.¡± Journal of Vascular Surgery. 2015;62(6):1394-1404.

[2] Yi-Juan Hu, Amand F Schmidt, Frank Dudbridge, Michael V Holmes, James M Brophy, Vinicius Tragante, Ziyi Li, Peizhou Liao, Ray McCubrey, Benjamin Horne, Aroon Hingorani, Folkert Asselbergs, Riyaz Patel, Qi Long on behalf of the GENIUS-CHD Consortium. ¡°.¡± Circulation: Cardiovascular Genetics. 2017;10(5):e001616.

[3] Liping Li, Liqun Zang, Feiran Zhang, Junchen Chen, Hui Shen, Liqi Shu, Feng Liang, Chunyue Feng, Deng Chen, Huikang Tao, Tianlei Xu, Ziyi Li, Yunhee Kang, Hao Wu, Lichun Tang, Pumin Zhang, Peng Jin, Qiang Shu, Xuekun Li. ¡°.¡± Human Molecular Genetics. 2017;26(13):2398-2411.

[4] Elizabeth P. Parks, Renee H. Moore, Ziyi Li, Chanelle T. Bishop-Gilyard, David B. Sarwer. ¡°.¡± JMIR Research Protocols. 2018;7(3):e52.

[5] Ying Cheng, Ziyi Li, Sasicha Manupipatpong, Li Lin, Xuekun Li, Tianlei Xu, Yong-hui Jiang, Qiang Shu, Hao Wu, and Peng Jin. ¡°.¡± Human Molecular Genetics. 2018;27(17):2955-2964.

[6] Ying Cheng , Miao Sun, Li Chen, Yujing Li, Li Lin, Bing Yao, Ziyi Li, Zhiqin Wang, Jack Chen, Zhigang Miao, Ning Xin, Luoxiu Huang, Emily Allen, Hao Wu, Xingshun Xu, Peng Jin. ¡°T.¡± Cell Reports. 2018;25(11):3194-3203.e4.

[7] Lixia Qin, Qian Xu, Ziyi Li, Li Chen, Yujing Li, Nannan Yang, Zhenhua Liu, Jifeng Guo, Lu Shen, Chao Shen, Chao Ma, Hao Wu, Peng Jin, Xiongwei Zhu, Beisha Tang. ¡°.¡± Human Molecular Genetics. 2020;29(1):149-158.

[8] Janise N. Kuehner, Junyu Chen, Emily C. Bruggeman, Chongchong Xu, Feng Wang, Yangping Li, Chadwick M. Hales, Ziyi Li, Li Chen, Zhexing Wen, Jingjing Yang, and Bing Yao. ¡°.¡± Cell Reports. 2021;35(4):109042.

[9] Katharine E Shelly, Nicholes R Candelaria, Ziyi Li, Emily G Allen, Peng Jin, David L Nelson. ¡°¡± Human Molecular Genetics. 2021;30(10):923-938.

[10] Jacob J. Mandela, Michael Youssefg, Shlomit Yust-Katz, Akash J. Patel, Ali Jalali, Ziyi Li, Jimin Wu, Ethan B. Ludmir, John F. de Groot. ¡°.¡± Journal of the Neurological Sciences. 2021;427:117538.

[11] Yunhee Kang, Ying Zhou, Yujing Li, Yanfei Han, Jie Xu, Weibo Niu, Ziyi Li, Shiying Liu, Hao Feng, Wen Huang, Ranhui Duan, Tianmin Xu, Nisha Raj, Hao Wu, Gary J Bassell, Stephen T Warren, Emily G Allen, Peng Jin, Zhexing Wen. ¡°.¡± Nature Neuroscience. 2021;24(10):1377-1391.

[12] Qian Zhang, Qicheng Hu, Junjie Wang, Zhigang Miao, Ziyi Li, Yuwen Zhao, Bo Wan, Emily G Allen, Miao Sun, Peng Jin, Xingshun Xu. ¡°.¡± Human Molecular Genetics. 2021;30(22):2149-2160.

[13] Cuida Meng, Lei Gu, Yujing Li, Ronghua Li, Yiqu Cao, Ziyi Li, Emily G Allen, Dongdong Zhu, Peng Jin. ¡°.¡± Human Molecular Genetics. 2021;30(21):1985-1995.

[14] Xu, Weize, Xicheng Zhang, Feng Liang, Yuhang Cao, Ziyi Li, Wenzheng Qu, Jinyu Zhang, Bingui Sun, Qiang Shu, Xuekun Li. . Frontiers in Cell and Developmental Biology. 2021;9:644375.

[15] Irene Ganan-Gomez, Hui Yang, Feiyang Ma, Guillermo Montalban-Bravo, Natthakan Thongon, Valentina Marchica, Guillaume Richard-Carpentier, Kelly Chien, Ganiraju Manyam, Feng Wang, Ana Alfonso, Shuaitong Chen, Caleb Class, Rashmi Kanagal-Shamanna, Justin P. Ingram, Yamini Ogoti, Ashley Rose, Sanam Loghavi, Pamela Lockyer, Benedetta Cambo, Muharrem Muftuoglu, Sarah Schneider, Vera Adema, Michael McLellan, John Garza, Matteo Marchesini, Nicola Giuliani, Matteo Pellegrini, Jing Wang, Jason Walker, Ziyi Li, Koichi Takahashi, Joel D. Leverson, Carlos Bueso-Ramos, Michael Andreeff, Karen Clise-Dwyer, Guillermo Garcia-Manero, Simona Colla. ¡°.¡± Nature Medicine. 2022;28(3):557-567.

[16] Wang, Sheng, Yang Yang, Andrew Suen, Jing Zhu, Brittney Williams, Jiang Hu, Fengqian Chen, Rosemary Kozar, Shiqian Shen, Ziyi Li, Anjana Jeyaram, Steven M.Jay, Lin Zou, Wei Chao. ¡°.¡± iScience. 2021;24(12):103441.

[17] Wilfred Leung, Matthew R. Teater, Ceyda Durmaz, Cem Meydan, Alexandra G. Chivu, Edward J. Rice, Ashlesha Muley, Jeannie M. Camarillo, Jaison Arivalagan, Amy Chadburn, Neil L. Kelleher, Charles G. Danko, Marcin Imielinski, Sandeep S. Dave, Scott A. Armstrong, Christopher E. Mason, Ziyi Li, Christopher R. Flowers ¡°¡± Cancer Discovery. 2022;12(7):1782-1803.

[18] Hussein A. Abbas, Edward Ayoub, Rashmi Kanagal, Hanxiao Sun, Nicholas Short, Musa Yilmaz, Sherry Pierce, Brent Cham, Shane Wing, Ziyi Li, Danielle Hammond, Elias Jabbour, Guillermo Garcia-Manero, Michael Andreeff, Naval Daver, Tapan Kadia, Marina Konopleva, Courtney DiNardo, Farhad Ravandi ¡°.¡± Blood Advances. 2023;7(5):828-831.

[19] Qiong Liu, Kailin Zhang, Yunhee Kang, Penghui Deng, Yujing Li, Yangping Li, Yun Tian, Qiying Sun, Yu Tang, Keqin Xu, Jun-Ling Wang, Jifeng Guo, Jia-Da Li, Kun Xia, Qingtuan Meng, Emily Allen, Zhexing Wen, Ziyi Li, Hong Jiang, Lu Shen, Ranhui Duan, Bing Yao, Beisha Tang, Yongcheng Pan. ¡°.¡± Science Advances. 2022;8(47):eadd6391.

[20] Weihua Ding, Lukas Fischer, Qian Chen, Ziyi Li, Liuyue Yang, Zerong You, Kun Hu, Lucy Chen, Peter Hu, Wei Chao, Peng Jin, Jianren Mao, Guoping Feng, Mark T. Harnett, and Shiqian Shen. ¡°.¡± Journal of Clinical Investigation. 2023;133(5):e166408.

[21] Ashley Aaroe, Razelle Kurzrock, Gaurav Goyal, Aaron Goodman, Harsh Patel, Gordon Ruan, Gary Ulaner, Jason Young, Ziyi Li, Derek Dustin, Ronald Go, Eli Diamond, and Filip Janku. ¡°.¡± Blood Advances.2023;7(15):3984-3992.

[22] Aiham Qdaisat, Sai-Ching Jim Yeung, Cristhiam M Rojas Hernandez, Pavani Samudrala, Mona Kamal, Ziyi Li, Adriana H. Wechsler. ¡°.¡± Journal of Clinical Medicine. 2022;11(3):643.

[23] Lixia Qin, Qian Xu, Shishi Min, Yujing Li, Ziyi Li, Chao Chen, Hao Wu, Junhai Han, Xiongwei Zhu, Peng Jin, Beisha Tang. ¡°.¡± Human Molecular Genetics. 2022;31(20):3494-3503.

[24] Hong Zheng; Pamela Pennington Lockyer; Naran Bao; Faezeh Darbaniyan; Ziyi Li; Rashmi Kanagal-Shamanna; Kelly A. Soltysiak; Hui Yang; Irene Ganan-Gomez; Guillermo Montalban-Bravo; Kelly S. Chien; Kim-Anh Do; Naval Daver; Guillermo Garcia-Manero; Yue Wei. ¡°. ¡° Leukemia & Lymphoma. 2022;63(13):3154-3164.

[25] Hussein A. Abbas, Edward Ayoub, Hanxiao Sun, Rashmi Kanagal-Shamanna, Nicholas J. Short, Ghayas Issa, Musa Yilmaz, Sherry Pierce, Daniel Rivera, Brent Cham, Shane Wing, Ziyi Li, Danielle Hammond, Elias Jabbour, Gautam Borthakur, Guillermo Garcia-Manero, Michael Andreeff, Naval Daver, Tapan Kadia, Marina Konopleva, Courtney DiNardo & Farhad Ravandi (2022) ¡°¡± Leukemia & Lymphoma. 2022;63(13):3105-3116.

[26] Kevin Liu, Allison Palmiero, Nitish Chopra, Brett Velasquez, Ziyi Li, Sam Beddar, Emil Sch¨¹ler. ¡°.¡± Journal of Applied Clinical Medical Physics. 2023;24(2):e13891.

[27] Mihnea P. Dragomir, Enrique Funtes-Mattei, Melanie Winkle, Keishi Okubo, Recep Bayraktar, Erik Knutsen, Aiham Qdaisat, Meng Chen, Yongfeng Li, Masayoshi Shimizu, Lan Pang, Kevin Liu, Xiuping Liu, Simone Anfossi, Huanyu Zhang, Drazen Papi?, Ines Koch, Anh M. Tran, Swati Mohapatra, Anh Ton, Mecit Kaplan, Mathew Anderson 6, Spencer Rothfuss, Robert Silasi, Ravi S. Keshari, Manuela Ferracin, Cristina Ivan, Cristian Rodriguez-Aguayo, Gabriel Lopez-Berestein, Constantin Georgescu, Pinaki P. Banjeree, Rafet Basar, Ziyi Li, David Horst, Catalin Vasilescu, Maria Teresa Sabrina Bertilaccio, Katy Rezvani, Florea Lupu, Sai-Ching Jim Yeung, George A. Calin. ¡°.¡± Journal of Clinical Investigation. 2023 Jul 17;133(14):e158348.

[28] Samuel Urrutia, Ziyi Li, Emmanuel Almanza, Alex Bataller, Rashmi Kanagal-Shamanna, Jayastu Senapati, Koji Sasaki, Kelly Chien, Guillermo Montalban-Bravo, Courtney DiNardo, Gautham Borthakur, Hagop Kantarjian, Carlos Bueso-Ramos, Sherry Pierce, Guillermo Garcia-Manero. ¡°.¡±&²Ô²ú²õ±è;2023;37(6):1397-1400.

[29] Kelly S Chien, Faustine Ong, Kunhwa Kim, Ziyi Li, Rashmi Kanagal Sharmanna, Courtney D DiNardo, Koichi Takahashi, Guillermo Montalban Bravo, Danielle Hammond, Koji Sasaki, Sherry A Pierce, Hagop M Kantarjian, Guillermo Garcia-Manero. ¡°.¡± Cancer Medicine. 2024;13(5):e7093.

[30] Kelly S. Chien, Ziyi Li, Kunhwa Kim, Rashmi Kanagal Shamanna, Faustine Ong, Guillermo Montalban Bravo, Tapan M. Kadia, Elias J. Jabbour, Naveen Pemmaraju, Danielle E. Hammond, Nicholas J. Short, Farhad Ravandi, Yesid Alvarado, Sherry A. Pierce, Xiao Qin Dong, Hui Yang, Yue Wei, Irene Ganan-Gomez, Simona Colla, Hagop M. Kantarjian, Guillermo Garcia-Manero. ¡±.¡± Blood. 2025 Nov 3;146:2075.

[31] Simone Anfossi, Faezeh Darbaniyan, Joseph Quinlan, Steliana Calin, Masa Shimizu, Meng Chen, Paola Rausseo, Michael Winters, Elena Bogatenkova, Kim-Anh Do, Ivan Martinez, Ziyi Li, Ignacio Wistuba, George A. Calin. ¡°.¡± Molecular Cancer. 2024;23(1):235.

[32] Samuel Urrutia, Ziyi Li, Alex Bataller, Emmanuel Almanza, Guillermo Montalban-Bravo, Elias Jabbour, Tapan Kadia, Farhad Ravandi3, Gautham Borthakur, Rashmi Kanagal-Shamanna, Carlos Bueso-Ramos, Sherry Pierce, Hagop Kantarjian, Guillermo Garcia-Manero, Kelly Chien. ¡°.¡± American Journal of Hematology. 2023;98(10):E281-E284.

[33] Andrew O. Suen, Fengqian Chen, Sheng Wang, Ziyi Li, Jing Zhu, Olivia Conn, Kerri Lopez, Ping Cui, Laurence Wechsler, Alan Cross, Gary Fiskum, Rosemary Kozar, Peter Hu, Catriona Miller, Lin Zou, Brittney Williams, Wei Chao. ¡°.¡± The Journal of Immunology. 2023;210(12):1990-2000.

[34] Hiroki Akiyama, Ran Zhao, Samar Jam Yazdani, Lauren B. Ostermann, Ziyi Li, Natalia Baran, Malcolm L. Pryor, Edward Ayoub, Yuki Nishida, Po Yee Mak, Vivian R. Ruvolo, Bing Z. Carter, Michael Andreeff, Jo Ishizawa. ¡°Mitochondrial regulation of GPX4-mediated ferroptosis in acute myeloid leukemia.¡± Leukemia. 2023 Dec 26:1-2.

[35] Guillermo Montalban-Bravo, Rashmi Kanagal-Shamanna, Ziyi Li, Danielle Hammond, Kelly Chien, Juan Jose Rodriguez-Sevilla, Koji Sasaki, Elias Jabbour, Courtney DiNardo, Koichi Takahashi, Nicholas Short, Ghayas C. Issa, Naveen Pemmaraju, Tapan Kadia, Farhad Ravandi, Naval Daver, Gautam Borthakur, Sanam Loghavi, Sherry Pierce, Carlos Bueso-Ramos, Hagop Kantarjian, Guillermo Garcia-Manero. ¡°.¡± British Journal of Haematology. 2023;203(4):581-592.

[36] Yue Wei, Hong Zheng, Pamela Pennington Lockyer, Faezeh Darbaniyan, Ziyi Li, Rashmi Kanagal-Shamanna, Hui Yang, Vera Adema, Simona Colla, and Guillermo Garcia-Manero. ¡°.¡± Leukemia. 2024;38(10):2284-2288.

[37] Monica K. Wattana, Angela Lindsay, Moira Davenport, Nicholas R. Pettit, Jazmin R. Menendez, Ziyi Li, Demis N. Lipe, Aiham Qdaisat, Jason J. Bischof. ¡°¡± AEM Education and Training. 2024;8(3):e10987.

[38] Mehmet Altan, Ruoxing Li, Ziyi Li, Runzhe Chen, Joshua Baguley, Sheshadri Ajay, Tran Hai, Latasha D. Little, Natalie Vokes, Saumil Gaudhi, Mara B. Antonoff, Stephen G. Swisher, Greg Lizee, Alexandre Reuben, John Heymach, Jianjun Zhang. ¡°.¡± Journal for Immunotherapy of Cancer. 2024;12(12):e008950.

[39] Alexandre Bazinet, Sai Prasad Desikan, Ziyi Li, Juanjo Rodriguez-Sevilla, Sangeetha Venugopal, Samuel Urrutia, Guillermo Montalban-Bravo, Koji Sasaki, Kelly Chien, Danielle Hammond, Rashmi Kanagal-Shamanna, Irene Ganan-Gomez, Tapan Kadia, Gautam Borthakur, Courtney DiNardo, Naval Daver, Elias Jabbour, Farhad Ravandi, Hagop Kantarjian, and Guillermo Garcia-Manero. ¡°.¡± Clinical Cancer Research. 2024;30(7):1319-1326.

[40] Yohei Saito, Yi Xiao, Jun Yao, Yunhai Li, Wendao Liu, Hongzhong Li, Xiangliang Yuan, Weiya Xia, Ms Ping Li, Qingling Zhang, Akosua Badu-Nkansah, Ziyi Li, Yongkun Wei, Xuedong Yin, Jun Zhao, Mr Seyed Kariminia, Yao-Chung Wu, Jinyang Wang, Jun Yang, Eek-hoon Jho, Paul Chiao, Rosa Hwang, Haoqiang Ying, Huamin Wang, Zhongming Zhao, Anirban Maitra, Mien-Chie Hung, Ronald DePinho, Dihua Yu. ¡°.¡± Cell Discovery. 2024 Oct 29;10(1):109.

[41] Linjie Luo, Peng Yang, Sofia Mastoraki, Xiayu Rao, Yan Wang, Nicole M. Kettner, Akshara Singareeka Raghavendra, Debasish Tripathy, Senthil Damodaran, Kelly K. Hunt, Jing Wang, Ziyi Li, Khandan Keyomarsi. ¡°.¡± Molecular Cancer. 2025 Feb 15;24(1):48.

[42] Kevin Liu, Trey Waldrop, Edgardo Aguilar, Nefetiti Mims, Denae Neill, Abagail Delahoussaye, Ziyi Li, David Swanson, Steven H Lin, Albert C Koong, Cullen M Taniguchi, Billy W Loo, Devarati Mitra, Emil Sch¨¹ler. . Preprint. bioRxiv. 2024;2024.04.19.590158. Accepted to the International Journal of Radiation Oncology, Biology, Physics.

[43] Kevin Liu, Uwe Titt, Nolan Esplen, Luke Connell, Elise Konradsson, Ming Yang, Xiaochun Wang, Takeshi Takaoka, Ziyi Li, Albert C. Koong, Devarati Mitra, Radhe Mohan, Billy W. Loo, Steven H. Lin, Emil Sch¨¹ler. ¡°.¡± International Journal of Radiation Oncology, Biology, Physics. 2025;122(2):491-501.

[44] Aiham Qdaisat, Ellie Stroh, Cielito Reyes-Gibby, Monica Wattana, Jayne Viets-Upchurch, Ziyi Li, Valda Page, Huda Fatima, Patrick Chaftari and Ahmed Elsayem. ¡°¡± Cancers (Basel). 2024 Nov 28;16(23):3988.

[45] Elina El-Badry, Luxiao Chen, Khader Ghneim, Ziyi Li, Kelsie Brooks, Jake Rhodes, Rafick-Pierre Sekaly, William Kilembe, Susan Allen, Hao Wu, Eric Hunter. ¡°.¡± Frontier in Immunology. 2025;15:1507530.

[46] Ruparoshni Jayabalan, Ricardo Gonzalez-Delgado, Luis Castillo Montanez, Jing Pan, Ruoxing Li, Jinsam Chang, Fernanda G. Kugeratski, Shajedul Islam, Marini Thian, Andreas B. Wild, Alexander Steinkasserer, Ziyi Li, Mauro Di Pilato. ¡°.¡± The Journal of Immunology. 2025 Nov;214(Supplement_1):vkaf283-420.

[47] Swaminathan Kumar, Meredith S. Pelster, Merve Hasanov, Renato A. Guerrieri, Courtney Hudgens, Debora Ledesma, Fuchenchu Wang, Grant Fischer, Julie Simon, Lauren E. Haydu5, Kalman Vigi Katlowitz, Yennu N. Vashisht Gopal, Jennifer McQuade, Lawrence Kwong, Jason Huse, Alexander J. Lazar, Michael T. Tetzlaff, Jeffrey Gershenwald, Aron Y. Joon, Ken Chen, Ziyi Li, Jeffrey T. Chang, Prahlad Ram, Sherise D. Ferguson, Michael A. Davies. ¡°.¡± Acta Neuropathologica Communications. 2025;13(1):75.

[48] Patricia A. Brock, Denise M. Langabeer, Valda D. Page, Ziyi Li, Aiham Qdaisat. ¡°¡± Journal of the American College of Emergency Physicians Open. 2025;6(6):100261.

[49] Boyang Ren, Ruoxing Li, Chien-Yu Lin, Chanhee Park, Sheng Wang, Andrew O. Suen, Shiming Yang, Rosemary Kozar, Lin Zou, Brittney Williams, Ziyi Li#, Peter Hu#, Wei Chao#. ¡°¡±. iScience. 2025 Oct 17;28(10).

[50] Steven H. Lin, Vivek Subbiah, Evan N. Cohen, Ziyi Li, Yingjuan June Lu, Ye Lin Son, Yue Lyu, Hui Gao, Gitanjali Jayachandran, Shinya Neri, Amrish Sharma, Daniel Karp, David Hong, Jordi Rodon Ahnert, Hao Yu, Jing Peng, G. Kenneth Lloyd, James R. Tonra, James M. Reuben, Lan Huang, Siqing Fu. ¡°.¡± Med. 2025 Oct 10;6(10):100752.

[51] F. Eymen Ucisik, Shekhar Khanpara, Burak Berksu Ozkara, Ziyi Li, Samir A. Dagher, Max Wintermark, Gregory N. Fuller. ¡°¡± American Journal of Neuroradiology. 2025 Oct 1;46(10):2091-2097.

[52] Loretta J. Nastoupil, Clark R. Andersen, Amy Ayers, Yucai Wang, Thomas M. Habermann, Dai Chihara, Brad S. Kahl, Brian K. Link, Jean L. Koff, Jonathon B. Cohen, Peter Martin, Izidore S. Lossos, Michele Stanchina, Sara Haddadi, Carla Casulo, Sabarish Ayyappan, Ruitao Lin, Ziyi Li, Melissa A. Larson, Matthew J. Maurer, Lynn Huynh, Chi Gao, Ramya Ramasubramanian, Mei Sheng Duh, Alex Mutebi, Tongsheng Wang, Monika Jun, Anthony Wang, Rajesh Kamalakar, Anupama Kalsekar, James R. Cerhan, Christopher R. Flowers. . Clinical Lymphoma Myeloma and Leukemia. 2025;25(4):e183-e199.e8.

[53] Trey Waldrop, Grace Murley, Brett Velasquez, Elise Konradsson, Denae Neill, Abagail Delahoussaye, William Schuler, Jorge De La Cerda, Ziyi Li, Mark D. Pagel, Emil Sch¨¹ler. ¡°.¡± Radiotherapy & Oncology. 2026;215:111329.

[54] Kelly S. Chien, Ziyi Li, Luca Lanino, Najla Al Ali, Samuel Urrutia, Alex Bataller, Rashmi Kanagal-Shamanna, Sanam Loghavi, Yue Lyu, Ahmed Abdelhakeem, Tareq Abuasab, Emmanuel Almanza, Georgina Gener Ricos, Alexandre Bazinet, Alessia Campagna, Giulia Maggioni, Eric Padron, Zhouer Xie, Guillermo Montalban-Bravo, Nicholas J. Short, Elias J. Jabbour, Tapan M. Kadia, Farhad Ravandi, Gautam Borthakur, Courtney D. DiNardo, Danielle Hammond, Mahesh Swaminathan, Koji Sasaki, Xiao Qin Dong, Sherry A. Pierce, David Sallman, Hagop M. Kantarjian, Matteo G. Della Porta, Guillermo Garcia-Manero, Rami Komrokji. ¡°.¡± Leukemia. 2026;40(4):841-844.

[55] Xen Ping Hoi, Mary M. Stangis, Sarah E. Glass, Jin-Hee Kim, Seung Woo Kang, W. Nathaniel Brennen, Ziyi Li, William M. Grady, Srinivasan Yegnasubramanian, Peter Kuhn, Costas A. Lyssiotis, Akiko Sagara, Martha J. Shrubsole, Humam Kadara, Ying Yuan, Robert J. Coffey, Ken S. Lau, Angelo M. De Marzo, Anirban Maitra, Jimin Min, Ming Yu, Keith S. Chan, TBEL Consortium. . Cancer Cell. 2026;44(1):6-11.

[56] Alexandre Bazinet, Alex Bataller, Kelly Chien, Koji Sasaki, Guillermo Montalban-Bravo, Danielle Hammond, Ian Bouligny, Mahesh Swaminathan, Wei Ying Jen, Eitan Kugler, Rashmi Kanagal-Shamanna, Tapan Kadia, Gautam Borthakur, Courtney DiNardo, Nicholas Short, Naveen Pemmaraju, Elias Jabbour, Naval Daver, Farhad Ravandi, Samuel Urrutia, Georgina Gener-Ricos, Julie Braish, Robert Briski, Juan Jose Rodriguez-Sevilla, Ziyi Li, Richard E. Champlin, Elizabeth J. Shpall, Amin Alousi, Betul Oran, Chitra Hosing, Jeremy L. Ramdial, Amanda Olson, Sherry Pierce, Julianne Chen, Hagop Kantarjian, Guillermo Garcia-Manero, Uday Popat. ¡°¡± Blood Cancer Journal. 2026;16(1):48.

[57] Juan Jose Rodriguez-Sevilla, Kelly S. Chien, Ziyi Li, Fatima Jelloul, Ruoxing Li, Najla Al Ali, David Sallman, Rashmi Kanagal-Shamanna, Clifford M. Csizmar, Abhishek Mangaonkar, Mrinal Patnaik, Andres Jerez, Maria Julia Montoro, David Valcarcel, Sandra Casta?o-D¨ªez, Marina Diaz-Beya, Jordi Esteve, Monica Del Rey, Maria Diez-Campelo, Xavier Calvo, Francesc Sole, Eric Padron, Guillermo Montalban-Bravo, Guillermo Garcia-Manero, Rami S. Komrokji. ¡°FLT3 mutations in myelodysplastic syndromes and chronic myelomonocytic leukemia: a multi-center analysis.¡± Submitted.

[58] Guillermo Montalban-Bravo, Chong Wu, Juan Jose Rodriguez-Sevilla, Yue Wei, Kelly Chien, Ian Bouligny, Rashmi Kanagal-Shamanna, Ziyi Li, Anuya Natu, Mark Gurney, Alexandre Bazinet, Danielle Hammond, Alex Bataller, Gautam Borthakur, Nicholas Short, Courtney DiNardo, Tapan Kadia, Farhad Ravandi, Naval Daver, Naveen Pemmaraju, Elias Jabbour, Ghayas Issa, Sa Wang, Keyur Patel, Guilin Tang, L. Jeffrey Medeiros, Terra Lasho, Christy Finke, Aref Al-Kali, Clifford Csizmar, Hassan Alkhateeb, Naseema Gangat, Abhishek Mangaonkar, David Roman-Bravo, Leonor Arenillas, Ayalew Tefferi, Hagop Kantarjian, Guillermo Garcia-Manero, Xavier Calvo, Mrinal Patnaik, Sanam Loghavi. ¡°.¡± Blood Cancer Discovery. 2026;7(3):414-430.

[59] Guang Lei, Zhengze Lu, Zhihao Xu, Chen Braun, David Huo, Jian Gao, Lin Tan, Ting Hong, Shengrong Wu, Mingchuang Sun, Xi Zhao, Qidong Li, Xiong Chen, Yuelong Yan, Hyemin Lee, Chao Mao, Li Zhuang, Li-Ting Ku, Nahum Puebla, Hampartsoum Barsoumian, Jun Yao, Lingzhi Hong, Jianjun Zhang, Hai Tran, J. Jack Lee, Don Gibbons, Ara Vaporciyan, John Heymach, Chunru Lin, Eyal Gottlieb, Mingjian James You, James W. Welsh, Steven H. Lin, Xingxing Zang, Ziyi Li, Boyi Gan. ¡°Cuproptosis¨Cimmunity crosstalk informs a strategy to overcome immunotherapy resistance¡±. Under invited revision.

[1] Ziyi Li, Hao Wu. ¡°.¡± Handbook of Statistical Bioinformatics. Springer 2022.

[2] Ziyi Li, Peng Yang. ¡°¡±. Transcriptome Data Analysis: Methods and Protocols. Springer 2024.