Publications
Journal Publications
Garrett A, Darzi N, Deshmukh A, Rosenfeld N, Goldman O, Adler L, Bab-Dinitz E, Singer O, Hassani Najafabadi A, Wong CW, Bose S, Randon PM, Bustamante F, Larios R, Brandis A, Mehlman T, Smaglo B, Chang P, Oliva J, Haymaker C, Nagawekar L, Wu SR, Huang Y, Shen A, Vora A, Padilla JF, Pfeffer A, Sutherland G, Starr M, Zimmers T, Zhu Y, Morizio J, Erez A, Shen X. . Cell. 2025 Jul 29:S0092-8674(25)00805-0. doi: 10.1016/j.cell.2025.07.016. Epub ahead of print. PMID: 40780194.
Khorsandi D, Yang JW, Foster S, Khosravi S, Hosseinzadeh Kouchehbaghi N, Zarei F, Lee YB, Runa F, Gangrade A, Voskanian L, Adnan D, Zhu Y, Wang Z, Jucaud V, Dokmeci MR, Shen X, Bishehsari F, Kelber JA, Khademhosseini A, de Barros NR. . Advanced Healthcare Materials. 2024 Aug;13(21):e2302331. doi: 10.1002/adhm.202302331. Epub 2024 Mar 1. PMID: 38359321; PMCID: PMC11324859.
Eckhoff AM, Fletcher AA, Kelly MS, Dohlman A, McIntyre CA, Shen X, Iyer MK, Nussbaum DP, Allen PJ. . Annals of Surgery. 2024 Apr 16. doi: 10.1097/SLA.0000000000006299.
Zhu X, Huang Q, Jiang L, Nguyen V-T, Vu T, Devlin G, Shaima J, Wang X, Chen Y, Ma L, Xiang K, Wang E, Rong Q, Zhou Q, Kang Y, Asokan A, Feng L, Hsu S-WD, Shen X*, Yao J*. . Science Advances. (2024) Mar 22, 10(12). *co-corresponding authors
Jiang C, Chao C-C, Li J, Ge X, Shen A, Jucaud V, Cheng C, Shen X. (2024) . iScience, 2004 Mar 15;27(3), doi: 10.1016/j.isci.2024.109277.
Xiang K, Wang E, Mantyh J, Rupprecht G, Negrete M, Sanati G, Hsu C, Randon P, Dohlman A, Kretzschmar K, Bose S, Giroux N, Ding S, Wang L, Balcazar JP, Huang Q, Sundaramoorthy P, Xi R, McCall SJ, Wang Z, Jiang C, Kang Y, Kopetz S, Crawford GE, Lipkin SM, Wang X-F, Clevers H, Hsu D, Shen X. (2024) . Advanced Science. 2024 Feb 21:e2303379. doi: 10.1002/advs.202303379.
Gurrea-Rubio M, Wu Q, Amin MA, Tsou P-S, Campbell PL, Amarista CI, Ikari Y, Brodie WD, Mattichak MN, Muraoka S, Randon PM, Lind ME, Ruth JH, Mao-Draayer Y, Ding S, Shen X, Cooney LA, Lin F, Fox DA. . Cancer Immunology Immunotherapy 73, 34 (2024). doi: 10.1007/s00262-023-03578-1.
Bose S, Shen X. . Cell Stem Cell. 2024 Jan 4;31(1):1-2. doi: 10.1016/j.stem.2023.12.010. PMID: 38181746.
McClain MT, Zhbannikov I, Satterwhite LL, Henao R, Giroux NS, Ding S, Burke TW, Tsalik EL, Nix C, Balcazar JP, Petzold EA, Shen X, Woods CW. . iScience. 2023 Nov 29;27(1):108288. doi: 10.1016/j.isci.2023.108288.
Wang W, Hariharan M, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Ding W, Liu H, Tian W, Zhou J, Chen H, Wei B, G¨¹nd¨¹z IB, Norell T, Broderick TJ, McClain MT, Satterwhite LL, Burke TW, Petzold EA, Shen X, Woods CW, Fowler VG, Ruffin F, Panuwet P, Barr DB, Beare JL, Smith AK, Spurbeck RR, Vangeti S, Ramos I, Nudelman G, Sealfon SC, Castellino F, Walley AM, Evans T, M¨¹ller F, Greenleaf WJ, Ecker JR. . bioRxiv. 2023 Jun 30:2023.06.29.546792. doi: 10.1101/2023.06.29.546792
Jabbar S, Mathews P, Wang X, Sundaramoorthy P, Chu E, Piryani SO, Ding S, Shen X, Doan PL, Kang Y. . Exp Hematol Oncol. 2022 Oct 31;11(1):83. doi: 10.1186/s40164-022-00329-3.
Dangi A, Husain I, Jordan CZ, Yu S, Natesh N, Shen X, Kwun J, Luo X. . Journal of the American Society of Nephrology. 2022 Aug 16;33(10):1876-90. doi: 10.1681/ASN.2022020139.
Bose S, Barroso M, Chheda MG, Clevers H, Elez E, Kaochar S, Kopetz SE, Li X-N, Meric-Bernstam F, Meyer CA, Mou H, Naegle KM, Pera MF, Perova Z, Politi KA, Raphael BJ, Robson P, Sears RC, Tabernero J, Tuveson DA, Welm AL, Welm BE, Willey CD, Salnikow K, Chuang JH, Shen X. . Cancer Cell. 2022 Oct 18;S1535-6108(22)00475-5. doi: 10.1016/j.ccell.2022.09.017.
Bose S, Yao H, Huang Q, Whitaker R, Kontos CD, Previs R, Shen X. . Journal of Ovarian Research. (2022) 15:114. DOI:https://doi.org/10.1186/s13048-022-01046-5
Dohlman AB, Klug J, Mesko M, Gao IH, Lipkin S, Shen X, Iliev ID. . Cell. (2022). 2022 Sep 29;185(20):3807-3822.e12. doi: 10.1016/j.cell.2022.09.015.
Wang Z, Boretto M, Millen R, Natesh N, Reckzeh ES, Hsu C, Negrete M, Yao H, Quayle W, Heaton BE, Harding AT, Bose S, Driehuis E, Beumer J, Rivera GO, van Ineveld RL, Gex D, DeVilla J, Wang D, Puschhof J, Geurts MH, Yeung A, Hamele C, Smith A, Bankaitis E, Xiang K, Ding S, Nelson D, Delubac D, Rios A, Abi-Hachem R, Jang D, Goldstein BJ, Glass C, Heaton NS, Hsu D, Clevers H, Shen X. . Stem Cell Report. (2022). Vol. 17 1¨C17. September 13. DOI:https://doi.org/10.1016/j.stemcr.2022.07.016
Bose S, Huang Q, Ma Y, Wang L, Rivera GO, Ouyang Y, Whitaker R, Gibson RA, Kontos CD, Berchuck A, Previs R, Shen X. . Cell Reports. (2022). 2022 Jun 28;39(13):111012. doi: 10.1016/j.celrep.2022.111012.
Wu Y, Wong CW, Chiles EN, Mellinger A, Bae H, Jung S, Peterson T, Wang J, Negrete M, Huang Q, Wang L, Jang C, Muddiman D, Su X, Williamson I, Shen X. . Cell Metabolism. (2022), July 5;34(22) doi:https://doi.org/10.1016/j.cmet.2022.05.007.
Ding S, Hsu C, Wang Z, Natesh NR, Millen R, Negrete M, Giroux N, Rivera GO, Dohlman A, Bose S, Rotstein T, , Spiller K, Yeung A, Sun Z, Williamson I, Nelson DA, Delubac D, Oh S, Rupprecht G, Isaacs J, Jia J, Shen JP, Kopetz S, McCall S, Smith A, Gjorevski N, Walz AC, Antonia S, Berger EM, Clevers H, Hsu D, Shen X. . Cell Stem Cell. (2022), Jun 2;29(6):905-914 doi:https://doi.org/10.1016/j.stem.2022.04.006.
Giroux NS, Ding S, McClain MT, Burke TW, Petzold E, Chung HA, Rivera GO, Wang E, Xi R, Bose S, Rotstein T, Nicholson BP, Chen T, Henao R, Sempowski GD, Denny TN, De Ussel MI, Satterwhite LL, Ko ER, Ginsburg GS, Kraft BD, Tsalik EL, Shen X, Woods CW. . Scientfic Reports. 2022 Jul 9;12(1):11714. doi: 10.1038/s41598-022-15668-8.
Zhu X, Huang Q, DiSpirito A, Vu T, Rong Q, Peng X, Sheng H, Shen X, Zhou Q, Jiang L, Hoffmann U, Yao J. . Light, Science & Applications. 2022 May 17;11(1):138. doi: 10.1038/s41377-022-00836-2.
Naqvi I, Giroux N, Olson L, Morrison SA, Llanga T, Akinade TO, Zhu Y, Zhong Y, Bose S, Arvai S, Abramson K, Chen L, Que L, Kraft B, Shen X, Lee J, Leong KW, Nair SK, Sullenger B. . Biomaterials. 2022 Apr;283:121393. Epub 2022 Jan 28. doi: 10.1016/j.biomaterials.2022.121393.
Li M, Beaumont N, Ma C, Rojas J, Vu T, Harlacher M, O'Connell G, Gessner RC, Kilian H, Kasatkina L, Chen Y, Huang Q, Shen X, Lovell JF, Verkhusha VV, Czernuszewicz T, Yao J. . IEEE Transactions on Medical Imaging. 2022 Apr 20;PP. doi: 10.1109/TMI.2022.3168859. Online ahead of print. PMID: 35442884.
Artola-Bor¨¢n M, Fallegger A, Priola M, Jeske R, Waterboer T, Dohlman AB, Shen X, Wild S, He J, Levesque MP, Yousefi S, Simon HU, Cheng PF, M¨¹ller A. . Cell Reports. 2022 Feb 8;38(6):110359. doi: 10.1016/j.celrep.2022.110359.
Mines R, Lipniacki T, Shen X. . PLOS Computational Biology. 2022 Feb 10;18(2):e1009811.
Murthy P, Xi R, Arguijo D, Everitt J, Kocak D, Kobayashi Y, Bozec A, Vicent S, Xiang K, Ding S, Crawford GE, Hsu D, Tata PR, Reddy T, Shen X. . Developmental Cell. 2022 Feb 7;57(3):310-328.e9. doi: 10.1016/j.devcel.2022.01.006.
Li X, Davis RC, Xu Y, Wang Z, Souma N, Sotolongo G, Bell J, Ellis M, Howell D, Shen X, Lafata KJ, Barisoni L. . Journal of Medical Imaging. 2021 Nov;8(6):067501. doi: 10.1117/1.JMI.8.6.067501. Epub 2021 Dec 20.
Bose S, Clevers H, Shen X. . Med 2(9):1011-1026 Sep 2021.
Wang L, Wang E, Balcazar JP, Wu Z, Xiang K, Wang Y, Huang Q, Negrete M, Chen K-Y, Li W, Fu Y, Dohlman A, Mines R, Zhang L, Kobayashi Y, Chen T, Shi G, Shen JP, Kopetz S, Tata PR, Moreno V, Gersbach C, Crawford G, Hsu D, Huang E, Bu P, Shen X. . Advanced Science Aug 10;e2004673. doi: 10.1002/advs.202004673 (2021).
Dai Z, Yang X, Wu F, Wang L, Xiang K, Li P, Lv Q, Tang J, Dohlman A, Dai L, Shen X, You L. . Nature Communications 12, no. 1 (2021).
Wang L, Balmat TJ, Antonia AL, Constantine FJ, Henao R, Burke TW, Ingham A, McClain MT, Tsalik EL, Ko ER, Ginsburg GS, DeLong MR, Shen X, Woods CW, Hauser ER, Ko DC. . Genome Medicine 13, no. 1 (2021)
Yu C, Littleton S, Giroux NS, Mathew R, Ding S, Kalnitsky J, Yang Y, Petzold E, Chung HA, Rivera GO, Rotstein T, Xi R, Ko ER, Tsalik EL, Sempowski GD, Denny TN, Burke TW, McClain MT, Woods CW, Shen X*, Saban DR. . Med (N Y) (2021). *equal corresponding author.
Garrett AD, Rakhilin N, Wang N, McKey J, Cofer G, Anderson RB, Capel B, Johnson GA, Shen X. . Journal of Neural Engineering (2021). May 12. doi: 10.1088/1741-2552/ac0089
Tung KL, Chen KY, Negrete M, Chen T, Safi A, Aljamal AA, Song L, Crawford GE, Ding S, Hsu DS, Shen X. . Genes and Diseases 8, no. 2 (2021): 203-214.
Sarvestani SK, Signs S, Hu B, Yeu Y, Feng H, Ni Y, Hill DR, Fisher RC, Ferrandon S, DeHaan RK, Stiene J, Cruise M, Hwang TH, Shen X, Huang EH. . Nature Communications 12, no. 1 (2021).
Huang Q, Garrett A, Bose S, Blocker S, Rios AC, Clevers H, Shen X. . Cell Stem Cell 28, no. 4 (2021): 603-622.
McClain MT, Constantine FJ, Henao R, Liu Y, Tsalik EL, Burke TW, Steinbrink JM, Petzold E, Nicholson BP, Rolfe R, Kraft BD, Kelly MS, Saban DR, Yu C, Shen X, Ko EM, Sempowski GD, Denny TN, Ginsburg GS, Woods CW. . Nature Communications 12, no. 1 (2021).
Dohlman A, Mendoza DA, Ding S, Gao M, Dressman H, Iliev ID, Lipkin SM, Shen X. The Cancer Microbiome Atlas (TCMA): A Pan-Cancer Comparative Analysis to Distinguish Organ-Associated Microbiota from Equiprevalent Contaminants. Cell Host & Microbe, 2020 Dec 21;S1931-3128(20)30663-6. doi: 10.1016/j.chom.2020.12.001.
Sarvestani SK, Signs S, Hu B, Yeu Y, Feng H, Ni Y, Hill DR, Fisher RC, Ferrandon S, DeHaan RK, Stiene J, Cruise M, Hwang TH, Shen X, Spence JR, Huang EH. . Nature Communications 12, no. 1 (2021).
Sarvestani SK, DeHaan RK, Miller PG, Bose S, Shen X, Shuler ML, Huang EH. . iScience 23, no. 11 (2020).
Chen T, Oh S, Gregory S, Shen X *, Diehl AM. . JCI Insight 5, no. 22 (2020). *equal corresponding author.
Dangi A, Natesh NR, Husain I, Ji Z, Barisoni L, Kwun J, Shen X, Thorp EB, Luo X. . JCI Insight 5, no. 20 (2020).
Somarelli JA, Roghani RS, Moghaddam AS, Thomas BC, Rupprecht G, Ware KE, Altunel E, Mantyh JB, Kim SY, McCall SJ, Shen X, Mantyh CR, Hsu DS. . Molecular Cancer Therapeutics (2020).
Altunel E, Roghani RS, Chen K-Y, Kim SY, McCall S, Ware KE, Shen X, Somarelli JA, Hsu DS. . BMC Cancer 20, no. 1 (2020).
Davis R, Lafata K, Li X, Souma N, Howell D, Shen X, Barisoni L. A Deep Learning Approach to Analysis of Kidney Transplant Frozen Sections. In Modern Pathology, 1573. Vol. 33., 2020.
Bauer M, Nascakova Z, Mihai A-I, Cheng PF, Levesque MP, Lampart S, Hurwitz R, Pfannkuch L, Dobrovolna J, Jacobs M, Bartfeld S, Dohlman A, Shen X, Gall AA, Salama NR, T?pfer A, Weber A, Meyer TF, Janscak P, M¨¹ller A. . Nature Communications 11, no. 1 (2020).
Huang Q, Cohen MA, Alsina FC, Devlin G, Garrett A, McKey J, Havlik P, Rakhilin N, Wang E, Xiang K, Mathews P, Wang L, Bock C, Ruthig V, Wang Y, Negrete M, Wong CW, Murthy P, Zhang S, Daniel AR, Kirsch DG, Kang Y, Capel B, Asokan A, Silver DL, Jaenisch R, Shen X. . Science. 368, no. 6487 (2020): 181-186.doi:10.1126/science.aba0210
Shen X. . Nature Medicine 26, no. 1 (2020):14. doi; 10.1038/s41591-019-0718-6
Rakhilin N, Garrett A, Eom C-Y, Chavez K, Small DM, Daniel A, Kaelberer MM, Mejooli MA, Huang Q, Ding S, Kirsch DG, Boh¨®rquez DV, Nishimura N, Barth BB, Shen X. (2019). . Nature Communications. 10, no.1.
Dohlman AB, Shen X. (2019) . Experimental Biology and Medicine 244, no. 6 (2019): 445-458.
Roper J, Shen X. (2019) . Gastroenterology 157, no. 1 (2019): 260-261.
Xi R, Murthy P, Tung K-L, Guy CD, Wan J, Li F, Wang Z, Li X, Varanko A, Rakhilin N, Xin Y, Liu B, Qian S-B, Su L, Han Y, Shen X. . PLoS One 14, no. 1 (2019).
Wang L, Wang E, Wang Y, Mines R, Xiang K, Sun Z, Zhou G, Chen K-Y, Rakhilin N, Chao S, Ye G, Wu Z, Yan H, Shen H, Everitt J, Bu P, Shen X. (2018) , eLife, 2018;7:e39479 doi: 10.7554/eLife.39479.
Xu Y, Huang L, Kirschman JL, Vanover DA, Tiwari PM, Santangelo PJ, Shen X, Russell DG. (2019) . The Journal of Immunology, ji1800924; doi: 10.4049/jimmunol.1800924.
Kaelberer M, Buchanan K, Klein M, Barth B, Wen G, Montoya M, Shen X, Boh¨®rquez V. (2018). . Science, 361 (6408), doi: 10.1126/science.aat5236.
Choi J, Rakhilin N, Gadamsetty P, Joe DJ, Tabrizian T, Lipkin SM, Huffman DM, Shen X, Nishimura N (2018), . Scientific Reports, 8, no. 1.
Bu P, Chen KY, Xiang K, Johnson C, Crown S, Rakhilin N, Ai Y, Wang L, Xi R, Astapova I, Han Y, Li J, Barth BB, Lu M, Gao Z, Zhang L, Herman M, Hsu D, Zhang G-F, Shen X. (2018) . Cell Metabolism, 27 (6), 1249¨C1262, June 5, 2018. doi: 10.1016/j.cmet.2018.04.003.
Murthy PKL, Srinivasan T, Bochter MS, Varanko A, Xi R, Tung KL, Fatih S, Xu K, Maletic-Savatic M, Cole SE, Shen X. (2018) Spatially Specific Fringe Modulation of Notch Ligands Supports Intestinal Homeostasis. eLife, 2018;7:e35710 doi: 10.7554/eLife.35710.
Xu Y, Wang L, Zimmerman MD, Chen K-Y, Huang L, Fu D-J, Kaya F, Rakhilin N, Nazarova EV, Bu P, Dartois V, Russell DG, Shen X. (2018) . PLoS Pathogen, 14(4): e1006974.
Barth BB, Huang H-I, Hammer GE, Shen X. (2018) . Micromachines 9, 428.
Barth B, Shen X. (2018) , Brain Research, 1693(Pt B):174-179. doi: 10.1016/j.brainres.2018.02.038.
Klose CSN, Mahlakoiv T, Moeller JB, Rankin LC, Flamar A-L, Kabata H, Monticelli LA, Moriyama S, Putzel GG, Rakhilin N, Shen X, Kostenis E, Konig GM, Senda T, Carpenter D, Farber DL, Artis D. (2017) . Nature, 549(7671):282-286. Sep 6, 2017.
Barth BB, Henriquez CS, Grill WM, Shen X. (2017) . Journal of Neural Engineering. Aug 17, 2017.
Kulkarnia S, Miccib M, Lesera J, Shinc C, Tangd S-C, Fua Y-Y, Liua L, Lia Q, Sahaa M, Lia C, Enikolopove G, Beckerg L, Rakhilinh N, Anderson M, Shen X, Dong X, Bogunovic M, Pasrichaa P. (2017) . Proc. Natl. Acad. Sci. USA. April 18, 2017, doi: 10.1073/pnas.1619406114
Chen KY, Srinivasan T, Tung KL, Belmonte JM, Choi J, Rakhilin N, King S, Varanko AK, Wang L, Witherspoon M, Nishimura N, Glazier J, Lipkin SM, Bu P, Shen X. (2017) . Molecular Systems Biology, 13(4): p. 927.
Wang L, Bu P, Shen X. Molecular & Cellular Oncology 3, no. 4 (2016).
Wang Y, Huang D, Chen KY, Cui M, Wang W, Huang X, Awadellah A, Li Q, Friedman A, Xin WW, Di Martino L, Cominelli F, Miron A, Chan R, Fox J, Xu Y, Shen X, Markowitz S, Maillard I, Lowe JB, Xin W, Zhou L. (2016) . Gastroenterology, pii: S0016-5085(16)35029-6. doi: 10.1053/j.gastro.2016.09.004.
Chen HJ, Wei Z, Sun J, Bhattacharya A, Savage DJ, Serda R, Mackeyev Y, Curley SA, Bu P, Wang L, Chen S, Cohen-Gould L, Huang E, Shen X, Lipkin S, Copeland NG, Jenkins NA, Shuler ML. (2016) . Nature Biotechnology. 34, 845-851 doi: 10.1038/nbt.3586.
Rakhilin N, Barth B, Choi J, Mu?oz NL, Kulkarni S, Jones J, Small D, Cheng Y-U, Cao Y, LaVinka C, Kan E, Dong X, Spencer M, Pasricha P, Nishimura N, Shen X. (2016) . Nature Communication, 7:11800. doi: 10.1038/ncomms11800.
Wang L, Bu P, Ai Y, Srinivasan T, Chen HJ, Xiang K, Lipkin SM, Shen X. (2016) . eLife 2016;10.7554/eLife.14620
Srinivasan T, Bich ET, Bu P, Tung K-L, Chen K-Y, Augenlicht L, Lipkin SM, Shen X. (2016) . Scientific Reports, 6(26069). doi: 10.1038/srep26069.
Srinivasan T, Walters J, Bu P, Than EB, Tung KL, Chen KY, Panarelli N, Milsom J, Augenlicht L, Lipkin SM, Shen X. (2016) . Cancer Research, 10.1158/0008-5472.CAN-15-3198.
Bu P, Wang L, Chen KY, Srinivasan T, Murthy PKL, Varanko AK, Chen HJ, Ai Y, King S, Lipkin SM, Shen X. (2016) . Cell Stem Cell, 18(2), 189-202. doi: 10.1016/j.stem.2016.01.006
Rothschild DE, Srinivasan T, Aponte-Santiago AL, Shen X, Allen IC. . J. Vis. Exp., no. 111 (2016).
Joe DJ, Hwang J, Johnson C, Cha H-Y, Lee J-W, Shen X, Spencer MG, Tiwari S, Kim M. . Journal of Nanoscience and Nanotechnology 16, no. 1 (2016): 144-151.
Cao Y, Rakhilin N, Gordon PH, Shen X, Kan EC. (2016) . J Neurosci Methods. 2015 Dec 21. pii: S0165-0270(15)00446-X. doi: 10.1016/j.jneumeth.2015.12.006.
Li J, Ai Y, Wang L, Bu P, Sharkey CC, Wu Q, Wun B, Roy S, Shen X, King MR. (2016) . Biomaterials. 76:52-65. doi: 10.1016/j.biomaterials.2015.10.046.Shengyi
Chen HJ, Sun J, Huang Z, Hou H, Arcilla M, Rakhilin N, Joe D, Choi J, Gadamsetty P, Milsom J, Nandakumar G, Longman R, Zhou XK, Edwards R, Chen J, Chen KY, Bu P, Wang L, Xu Y, Munroe R, Abratte C, Miller AD, G¨¹m¨¹? ZH, Shuler M, Nishimura N, Edelmann W, Shen X*, Lipkin SM. (2015) . Nature Biotechnology, 33,656¨C660 doi:10.1038/nbt.3239. *equal corresponding author.
Bu P, Wang L, Chen KY, Sun J, Rakhilin N, Closa A, Tung KL, Xu Y, Cummings B, Hsu D, Lipkin SM, Moreno V, G¨¹m¨¹? ZH, Shen X. (2015) . Nature Communications, 6:6879. doi: 10.1038/ncomms7879.
Chen K-Y, Joe DJ, Shealy JB, Land BR, Shen X. (2014) ., IEEE Eng. Med Biol., 2014 Aug;2014:86-9. doi:10.1109/EMBC.2014.6943535.
Chen K-Y, Liu X, Bu P, Lin CS, Rakhilin N, Locasale JW, Shen X. (2014) . IEEE Eng Med Biol., 4759-4762 doi: 10.1109/EMBC.2014.6944688.
Johnson C, Warmoes MO, Shen X, Locasale JW. . (2013) Cancer Letters, 0304-3835.
Shin YJ, Chen KY, Hencey B, Lipkin S, Sayed AH, Shen X. (2013) . BMC Systems Biology, 7:83.
Bu P, Chen KY, Lipkin SM, Shen X. (2013). Oncotarget, 4, 948.
Bu P, Chen KY, Chen JK, Wang L, Walters J, Shin YJ, Goerger JP, Sun J, Witherspoon M, Rakhilin N, Li J, Yang H, Milsom J, Lee S, Zipfel W, Jin MM, G¨¹m¨¹? ZH, Lipkin SM, Shen X. (2013). . Cell Stem Cell, 12, 602-615.
Shin YJ, Sayed AH, Shen X. (2012). . IEEE Eng Med Biol. 2012:5449-53
Li J, Bu P, Chen K, Shen X. (2013) . Journal of Biomedical Science and Engineering, 6, 134-143.
Shin YJ, Sayed AH, Shen X. (2012). . PLoS One, 7:1-6. E31657
Chen HJ, Edwards R, Tucci S, Bu P, Milsom J, Lee S, Edelmann W, Gumus ZH, Shen X*, Lipkin S. (2012). . The Journal of Clinical Investigation, 122:3184-96. *equal corresponding author.
Shin YJ, Hencey B, Lipkin S, Shen X. (2011). . PLoS One, 6:1-13. PMID: 21829536.
Sikandar S, Dizon D, Shen X, Li Z, Besterman J, Lipkin S. (2010). . Oncotarget, 1: 596-605.
Tan M, Kozden JB, Shen X, Shapiro L, McAdams H. (2010). . Proceedings of the National Academy of Sciences USA 107: 18985-18990.
Shen X, Collier J, Shapiro L, Dill D, Horowitz MA, McAdams HH. (2008). . Proceedings of the National Academy of Sciences USA 105-32: 11340-11345.
Shen X, Kahn JM, Horowitz MA. (2005). . Optics Letters, 30: 2985-2987.
Book Chapters
Mines R, Chen K-Y, Shen X. "Agent-Based Modelling to Delineate Spatiotemporal Control Mechanisms of the Stem Cell Niche." Methods in Molecular Biology (Clifton, N.J.) 1975 (2019): 3-35.
Petritsch C, Shen X. ¡°Asymmetric Division of Cancer Stem Cells¡±. Cancer Stem Cells: Targeting the Roots of Cancer, Seeds of Metastasis, and Sources of Therapy Resistance. 285-315 (ISBN-13) 10.1016/B978-0-12-803892-5.00011-5.
Patents
US6789246: M. Sunderarjan and X. Shen, ¡°Method and apparatus for automatic layout of circuit structures¡±
US6802050: X. Shen and M. Sunderarja, ¡°Efficient layout strategy for automated design layout tools¡±
US20150164053A1: J.H. Chen, J.M. Lipkin, and X. Shen, ¡°Compositions and methods useful for making orthotopic tumors with controllable metastasis¡±
US20080072215: S. Boyd, X. Shen, M. Hershenson, L. Vandenberghe, C. Crucius, D. Colleran, and S. Mohan, ¡°Parser for signomial and geometric programs¡±
US9681647: J.H. Chen, J.M. Lipkin, and X. Shen, ¡°Mammal with an orthotopic tumor capable of metastasis, a method of making and a method of using¡±
WO2019067795: D. Hsu and X. Shen, ¡°Patient specific clinical trials and associated methods of treatment¡±
US20190231761: X. Shen, ¡°Compositions and methods for targeting fructose enzymes and transporters For The Treatment Of Cancer¡±
WO2018236880: B. Barth, W. Grill, and X. Shen, ¡°Systems and methods for the modulation of gut motility¡±
US2023/0002737: X. Shen, D. Hsu, Z. Wang, J. Motschman, and D. Delubac, ¡°Methods and apparatuses for patient-derived micro-organospheres¡±
US20210285054: X. Shen and S. Ding ¡°Precision drug screening for personalized cancer therapy¡±
WO2023042156: N. Natesh and X. Shen, ¡°Droplet organoid-based immuno-oncology assays and methods of using same¡±
WO2023042156: X. Shen and S. Ding, ¡°Methods and apparatus for testing immuno-oncology drugs and biologics using microorganospheres¡±
US11628382: Z. Wang and X. Shen, ¡°methods and apparatuses for purification of gel droplets supporting biological tissue¡±
EP4178666: X. Shen, A. O'Raw, J. Morizio, A. Deshmukh, A. Erez, and S. Ezagouri, ¡°Compositions and methods for treating cancer-associated cachexia¡±
WO2023215793A2: X. Shen, ¡°Patient-derived microorganospheres (mos) enable clinical precision oncology¡±
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